Water Protection Program
Concentrated Animal Feeding Operations
Background - In just the past 20 years, there has
been dramatic change in animal agricultural production in Missouri and the United States. These changes have included a significant increase in the overall size of individual operations, an increase in the number of animals raised per operation and a shift towards raising poultry and certain livestock within production barns. Concentrated animal feeding operations, frequently referred to as CAFOs, are large animal agricultural facilities that raise a specific number of animals in production barns or confinement pens.
The development and implementation of technology along with specialized production systems over the years has led to remarkable production efficiencies in raising animals, and has given farmers the capability of achieving precise control and management of animal manure and other farm- based nutrients as a fertilizer source on farm land.
While modern agricultural systems, including CAFOs, can help reduce the overall environmental impact of livestock and poultry production, the increase in animal concentration in barns has led to an increase in the environmental risk on an individual farm. Each one of these operations will generate a large amount of animal manure that must be managed properly. When this is accomplished, farmers will have a safe, reliable and sustainable fertilizer source for their farming operation. When it is not, the farm has the potential to negatively impact the state’s water resources.
Missouri's CAFO laws and regulations are designed to minimize these risks and are important for the long term protection of the environment. Laws and regulations are also important to preserve and maintain a strong and profitable agricultural industry for generations to come. Protecting the environment and the agricultural industry is a shared responsibility and doing so may have a positive impact on the environment, our food supply and local and state economies.
CAFO Permitting - At the state level, water quality is protected through the department’s permit application and approval process. Water pollution construction and operating permits are a requirement for all size and types of CAFOs. These permits typically have a list of very specific and stringent requirements to follow and operations are expected to keep detailed records of farm related activities and submit them to the state agency for review each year. In addition, the Missouri Department of Natural Resources has developed stringent state technical standards that CAFOs must follow and relate to the handling and land application of animal manure.
Maps, Publications, Fact Sheets and other information
- Animal Feeding Operations GIS Map Viewer
- Guide to Animal Feeding Operations, Fact Sheet--PUB915 - Includes information on Class I and Class II Operations
- How to Obtain a Concentrated Animal Feeding Operation Pemit in Missouri, Fact Sheet--PUB2351
- University of Missouri-Extension’s Nutrient Management website
- USDA-NRCS EQIP Website
General Permit Renewals and Meeting Information
- May 23, 2012 CAFO Permit Presentation
- May 23, 2012 CAFO Permittee and Stakeholder Informational Meeting
- May 23, 2012 CAFO Permit meeting video
- State and NPDES Draft Permits Highlighted Differences
- 2013 State General Permit (MOGS10000)
- 2013 NPDES General Permit (MOG010000)
- Response to comments received during Public Notice of the 2013 Draft State General Permit
- Response to Comments received during Public Notice of the 2013 Draft NPDES General Permit
- Guide to Animal Feeding Operations - Includes information on Class I and Class II Operations
Permitting Resources
- Form W - Application for Operating Permit, Form 780-2112
- Form F - Application for Construction Permit, Form 780-0725
- CAFO Annual Report Form, Form 780-1953
- CAFO Record Keeping Forms Checklist Form 780-2153
- 2009 Nutrient Management Technical Standards
- Wet Weather Emergency Management Practices for CAFOs
CAFO Statutes and Regulations
- Missouri Revised Statutes (640.700 - 640.758)
- Missouri Code of State Regulations
- 10 CSR 20-6.300 Concentrated Animal Feeding Operations
- 10 CSR 20-8.300 Manure Storage Design Regulation
Weather Related Websites
- DNR Monthly Precipitation Maps
- Missouri Climate Center Homepage
- High Plains Regional Climate Center
- University of Missouri Weather Stations
- National Weather Service Precipitation Maps
- CoCoRaHS Homepage
CAFO Related Websites
- University of Missouri-Extension’s Nutrient Management Website
- Heartland Regional Water Quality Initiative
- EPA CAFO Homepage
- National University Extension Homepage
Other Relevant Websites
- DNR Soil & Water Conservation Program
- MDC Private Landowner webpage
- Missouri Natural Resources Conservation Service
- University of Missouri-Extension Commercial Agriculture Program
- EPA Region VII
- Environmental Laws Affecting State Agriculture
- High Plains Regional Climate Center
- University of Missouri-Extension Weather Data
- CARES Map room
- DNR GIS Map viewer
- Code of Federal Regulation, Title 40
- Code of State Regulation, Title 10
- Missouri Revised Statutes Chapter 640
- Missouri Revised Statutes Chapter 644

